PyMOL - Further education in three-dimensional visualization of proteins
Type of event
- E-Learning + Live-Online
Who is the training course aimed at?
Would you like to visualize molecular structures reliably and according to the latest state of the art and science? Then this course is just right for you!
Our PyMol training course is aimed at specialists and managers, researchers and teachers who work with biological macromolecules – in laboratories, biotech companies, research facilities or medical institutions in the fields of
- Structural biology, molecular biology, biochemistry
- Bioinformatics
- Pharmaceutical research & drug development
- Medical research & translational medicine
- Chemical and biotechnological industry
Advanced students and doctoral candidates also benefit from in-depth knowledge transfer and practical exercises.
What requirements do I need?
You should have a basic knowledge of biochemistry or molecular biology, in particular the following topics
- Structure and composition of amino acids
- Secondary, tertiary and quaternary structure of proteins
- Functions of proteins in a biological context
- Familiarity with protein databases such as RCSB-PDB, PDBe or AlphaFold DB
For the advanced module, you should already be familiar with the basic functions of PyMOL, e.g.
- Creating and editing selections
- Activating/deactivating representations
- Coloring and camera settings
- Saving images and films
Are you unsure whether your previous knowledge is sufficient?
Feel free to contact us. We will advise you individually so that you can decide which module to start with. We can also find suitable solutions for career changers with relevant practical experience.
Do you want to not only understand scientific content, but make it visible? Would you like to communicate your research, your product or your teaching more clearly – and use the latest tools and methods to do so? Then this course is your chance to close the gap between data and knowledge.
As a practitioner, you will acquire skills in molecular visualization and analysis that you can integrate directly into your work processes – e.g. in structure elucidation, drug design or in the documentation of scientific results. This not only strengthens your personal expertise, but also makes an important contribution to the innovative strength and competitiveness of your company.
As a scientist, you will gain new insights into the three-dimensional structure of biological macromolecules – for example in the analysis of protein-ligand interactions or in mutation studies. Our course provides you with up-to-date methodological knowledge and application skills for your research – ideal for taking your projects and publications to a new level.
As a student or doctoral candidate, you will increase your attractiveness on the job market by acquiring specific know-how in PyMOL – a key qualification in life sciences, medicine and bioinformatics. Through practical exercises and individual support, we prepare you optimally for challenging tasks in research, industry and teaching.
The need for visually and analytically trained
What will you achieve?
By participating in our PyMOL course, you will secure and expand your professional qualifications in the field of molecular visualization and analysis – a key competence in modern bioscientific research and development. You will increase your opportunities to work in interdisciplinary teams by gaining a clear competitive edge in the analysis of complex protein structures, drug discovery or scientific communication.
The exchange with specialist colleagues on specific practical examples also promotes the expansion of your professional network. In this way, you create the basis for new career prospects – in research, industry or teaching.
What topics does the training course cover?
The offer consists of two modules, which can be booked individually or in combination:
- Module 1 (Basics) is designed as a self-study module with accompanying live online consultations. It introduces you step by step to working with PyMOL: from initial visualizations and targeted selections to the development of your own representations.
- Module 2 (Professional) is a live online course and deepens your knowledge of mutation studies, structural biology analyses and complex applications – ideal for those who already have PyMOL experience.
Our PyMOL course enables you to professionally visualize and analyse 3D structures of biological macromolecules such as proteins, DNA or ligands. You will learn how to use molecular data in a targeted manner – for structural analysis, mutation analysis or to visualize drug binding. This will provide you with the basis for well-founded decisions in research, teaching or industrial development.
Module 1: PyMOL Basics – Introduction to molecular visualization
Self-study course with live Q&A sessions
In this basic module, you will work on the content flexibly on our Moodle learning platform. You will also have the opportunity to ask your questions in live Q&A sessions, discuss application ideas (e.g. for video creation) and exchange ideas with the course instructor and other participants.
- Basics of 3D visualization
- First selections and simple measurement functions
- Deepening the selection methods (e.g. atoms or amino acids near ligands)
- Introduction to movie creation using simple examples
- Introduction to PyMOL scripting (e.g. measurements via script)
- Superpositions with drug examples in the active center
- Creating more complex selections, scripts and animated presentations
- Creation of an approx. 5-minute movie (900 frames)
- Presentation and collegial reflection of the results in the group
Module 2: PyMOL Professional – Mutation analysis and structure interpretation
Live online course with interactive practical examples
This advanced module is aimed at participants with solid prior knowledge of PyMOL. In live online sessions, you will work together with other participants on real case studies and apply your knowledge directly to specific questions from research or industry. The course leader will support you individually in transferring your knowledge to your professional practice.
- Analysis and visualization of intramolecular interactions
- Effects of amino acid substitutions on molecular interactions and protein structure
Case studies from research and development – e.g. drug binding, disease mechanisms, stability changes
Module 1 Basics
01.10.2025 - 22.01.2026
Module 2 Professional
23.01.2026 - 30.01.2026
Price and range of service
Module 1 Basics: 150,00 €, VAT exempt
E-learning with Live-Q&A-Sessions:
11.11., 18.11. and 25.11.2025
16:00-17:30 in each case
Module 2 Professional: 1.990,00 €, VAT exempt
6 live online course days with a total of 48 teaching units of 45 minutes each
Course language: English
Tips and information
- This course is taught exclusively in English. We will be happy to advise you on your participation options.
- With our English language coaching for scientists, laboratory technicians and medical employees, you can optimally prepare for the language requirements of your further training.
- Find out what our clients say about us: check out the reviews.
- Are you or have you been a customer of CQ and satisfied with our services? Recommend us to others and secure a reward voucher worth €100! Feel free to speak to our course instructors.
Contact person
Nassim El Masri
Antje Sonntag
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Suitable coachings for this course
Individuelles Karrierecoaching für Akademiker*innen
Deutsch für das Labor - Molekularbiologie, Mikrobiologie und Zellkultur
Leben und Arbeiten in Deutschland
Englisch für Naturwissenschaftler*innen, Laboranten*innen, medizinische Angestellte
